PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G38ML
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 671aa    MW: 72365.1 Da    PI: 5.4413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G38MLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12485530454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI +L
  Aradu.G38ML 485 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYITEL 530
                  799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-5746229IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.193481530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.13E-15484535No hitNo description
SuperFamilySSF474591.57E-18484551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-10485530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-19485551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16487536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MNLWTDDNSS VMEAFMTSSD LSSLWPPPPP PPQSASSAAV FNQDTLQQRL QALIEGARES  60
WTYAIFWQSS YDYPSSASTA VLGWGDGYYK GDEDKGKAKS TKTTTPAEQD HRKKVLRELN  120
SLISGSAAAP SDDVEEEVTD TEWFFLVSMT QSFVSGTGLP GQAFYHSSPV WLTGPDRLAG  180
SSCERARQGQ VFGLQTLVCI PSSNGVVELG STEMIFQNPD LMNKVRILFN FNSNSIDVGS  240
SWPLTGSTTT TAADQGENDP SSLWLNDSEI RDSVTTVTTV TTTTPASVIS VNPGSSALAE  300
TPSSVHLPNN NNNTHAGGAS QSQNRSFFSR ELNFSEFGFD GSNAVKTGNG QHHSLKPESG  360
EILSFGESKR SSYGGGGGGG GGGGNANFFS GQSQFVAAAE DNNGKKRKSP NSRGSNNDDG  420
MLSFTSGVIL PPSNMKSSGG GGDSDHSDLE ASVVKENESS RVVEPEKRPR KRGRKPANGR  480
EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL GDAISYITEL KSKLQTLESD  540
KDGLEKQLDS LKKDLDNVKK EASSAPPPLP DKELRMSSNN LVGGGKLIDL DIDVKIIGWD  600
AMIRIQCSKK NHPAARLMAA LMELDLDVHH ASVSVVNDLM IQQATVKMGS RFYTQEQLRS  660
ALTSKVGGDV R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-79412324195Transcription factor MYC3
4rqw_B5e-79412324195Transcription factor MYC3
4rs9_A5e-79412324195Transcription factor MYC3
4yz6_A5e-79412324195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1466474KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963299.10.0PREDICTED: transcription factor MYC4-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0L9UXK30.0A0A0L9UXK3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T3E20.0A0A0S3T3E2_PHAAN; Uncharacterized protein
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29383364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-167bHLH family protein